Publications

Selected publications

  1. Yi Zhong, Sarah Walker, Yuri Pritykin, Christina Leslie, Alexander Rudensky, Joris van der Veeken. Hierarchical regulation of the resting and activated T cell epigenome by major transcription factor families. Nature Immunology 2022 Jan;23(1):122-134.

  2. Joris van der Veeken*, Ariella Glasner*, Yi Zhong*, Wei Hu, Zhong-Min Wang, Regina Bou-Puerto, Louis-Marie Charbonnier, Talal A Chatila, Christina S Leslie, Alexander Y Rudensky. The transcription factor Foxp3 shapes regulatory T cell identity by tuning the activity of trans-acting itermediaries. Immunity 2020 Nov 17;53(5):971-984.e5.

  3. Joris van der Veeken*, Yi Zhong*, Roshan Sharma, Linas Mazutis, Phuong Duo, Dana Pe’er, Christina Leslie, Alexander Rudensky. Natural genetic variation reveals principles of stable epigenetic regulation in virus-specific CD8 T cells. Immunity 2019 May 21;50(5):1202-1217.

  4. Yi Zhong#, Theofanis Karaletsos, Philipp Drewe, Vipin T Sreedharan, David Kuo, Kamini Singh, Hans-Guido Wendel, Gunnar Rätsch#. RiboDiff: Detecting changes of mRNA translation efficiency from ribosome footprints. Bioinformatics 2017 Jan 1; 33(1): 139-141.

  5. The Cancer Genome Atlas Research Network (TCGA). The molecular taxonomy of primary prostate cancer. Cell 2015 Nov 5;163(4):1011-25.

  6. Yi Zhong, Philipp Drewe, Andrew L Wolfe, Kamini Singh, Hans-Guido Wendel, Gunnar Rätsch. Protein translational control and its contribution to oncogenesis revealed by computational methods. BMC Bioinformatics 2015, 16(Suppl 2):A6.

  7. Xiaodi Su*, Yingpu Yu*, Yi Zhong, Eugenia Giannopoulou, Xiaoyu Hu, Hui Liu, Justin Cross, Gunnar Rätsch, Charles Rice, Lionel B. Ivashkiv. Interferon-γ regulates cellular metabolism and mRNA translation to potentiate macrophage activation. Nature Immunology 2015 Aug;16(8):838-49.

  8. Andrew Wolfe*, Kamini Singh*, Yi Zhong, Philipp Drewe, Vinagolu K. Rajasekhar, Viraj R. Sanghvi, Konstantinos J. Mavrakis, Man Jiang, Justine E. Roderick, Joni Van der Meulen, Jonathan H. Schatz, Christina M. Rodrigo, Chunying Zhao, Pieter Rondou, Elisa de Stanchina, Julie Teruya-Feldstein, Michelle A. Kelliher, Frank Speleman, John A. Porco, Jerry Pelletier, Gunnar Rätsch, Hans-Guido Wendel. RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer. Nature 2014 Sep 4;513(7516):65-70.

  9. Yi Zhong*, Xiao Chang*, Xing-Jun Cao*, Yan Zhang, Huajun Zheng, Yongzhang Zhu, Chengsong Cai, Yuan-Yuan Li, Guo-Ping, Zhao, Shengyue Wang, Yixue Li, Rong Zeng, Xuan Li, Xiao-Kui Guo. Comparative proteogenomic analysis of the Leptospira interrogans virulence attenuated strain IPAV against the pathogenic strain 56601. Cell Research 2011 Aug;21(8):1210-29.

  10. Wei Zhao*, Yi Zhong*, Hua Yuan*, Jin Wang, Huajun Zheng, Ying Wang, Xufeng Cen, Feng Xu, Jie Bai, Xiaobiao Han, Gang Lu, Yongqiang Zhu, Zhihui Shao, Han Yan, Chen Li, Nanqiu Peng, Zilong Zhang, Yunyi Zhang, Wei Lin, Yun Fan, Zhongjun Qin, Yongfei Hu, Baoli Zhu, Shengyue Wang, Xiaoming Ding, Guo-Ping Zhao. Complete genome sequence of the rifamycin SV-producing Amycolatopsis mediterranei U32 revealed its genetic characteristics in phylogeny and metabolism. Cell Research 2010 Oct;20(10):1096-108.